Bioinformatics

In addition to cutting-edge data generation, the ATGC provides comprehensive bioinformatics services to support your research. Our expert bioinformatics team offers both initial and advanced analyses, leveraging robust, established pipelines built upon the most reliable open-source tools in the NGS field.

Recognizing that each project is unique, the ATGC bioinformatics team tailors pipelines to the specific characteristics of your data, ensuring the transformation of raw data into meaningful, manageable, and interpretable results. We collaborate closely with researchers throughout the process, providing regular updates on progress and delivering high-quality data sets and visualizations that meet your research needs.

Our bioinformatics team specializes in a wide range of analyses, with some of the most commonly requested services including:

• scRNA-seq: Single-cell RNA sequencing to explore gene expression at the single-cell level.
• Spatial Transcriptomics: Mapping gene expression across tissue samples to study the spatial organization of cells and tissues.
• RNA-seq: Comprehensive gene expression profiling for transcript discovery, quantification, and differential analysis.
• Variant Analysis: Identification and interpretation of genomic variants, including SNPs, indels, and structural variations.
• ChIP-seq: Chromatin immunoprecipitation sequencing for investigating protein-DNA interactions and chromatin modifications.
• 16S Metagenomics: Microbial community profiling using 16S ribosomal RNA sequencing to identify and analyze bacteria present in environmental or clinical samples.
• Ingenuity Pathway Analysis (IPA): A bioinformatics software that enables researchers to analyze and interpret complex 'omics data, including gene expression, miRNA, metabolomics, and proteomics.

While these are some of our most common analyses, the ATGC offers a variety of additional bioinformatics services tailored to the specific needs of your project. Please contact us for a consultation on custom analysis options.